Firing range (firing_range
)¶
Calculation¶
The firing range indicates the dispersion of the firing rate of a unit across the recording. It is computed by taking the difference between the 95th percentile’s firing rate and the 5th percentile’s firing rate computed over short time bins (e.g. 10 s).
Expectation and use¶
Very high levels of firing ranges, outside of a physiological range, might indicate noise contamination.
Example code¶
import spikeinterface.qualitymetrics as sqm
# Combine a sorting and recording into a sorting_analyzer
firing_range = sqm.compute_firing_ranges(sorting_analyzer=sorting_analyzer)
# firing_range is a dict containing the unit IDs as keys,
# and their firing firing_range as values (in Hz).
References¶
- spikeinterface.qualitymetrics.misc_metrics.compute_firing_ranges(sorting_analyzer, bin_size_s=5, percentiles=(5, 95), unit_ids=None, **kwargs)¶
Calculate firing range, the range between the 5th and 95th percentiles of the firing rates distribution computed in non-overlapping time bins.
- Parameters
- sorting_analyzer: SortingAnalyzer
A SortingAnalyzer object
- bin_size_sfloat, default: 5
The size of the bin in seconds.
- percentilestuple, default: (5, 95)
The percentiles to compute.
- unit_idslist or None
List of unit ids to compute the firing range. If None, all units are used.
- Returns
- firing_rangesdict
The firing range for each unit.
Notes
Designed by Simon Musall and ported to SpikeInterface by Alessio Buccino.
Literature¶
Designed by Simon Musall and adapted to SpikeInterface by Alessio Buccino.