SpikeInterface
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Contents:

  • Overview
  • Installation
  • Modules documentation
  • How to guides
  • Modules example gallery
    • Core tutorials
      • Recording objects
      • Sorting objects
      • Handling probe information
      • Waveform Extractor
      • Append and/or concatenate segments
      • Handle time information
    • Extractors tutorials
      • Read various format into SpikeInterface
      • Working with unscaled traces
    • Quality metrics tutorial
      • Quality Metrics Tutorial
      • Curation Tutorial
    • Comparison tutorial
      • Explore sorters weaknesses with ground-truth comparison
    • Widgets tutorials
      • RecordingExtractor Widgets Gallery
      • SortingExtractor Widgets Gallery
      • Waveforms Widgets Gallery
      • Peaks Widgets Gallery
  • Installing Spike Sorters
  • Viewers
  • Development
  • API
  • Release notes
  • Contact Us
SpikeInterface
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  • Modules example gallery
  • Edit on GitHub

Modules example gallery¶

Here some generated examples.

They are downloadable as notebooks or python scripts.

Core tutorials¶

The spikeinterface.core module

  • RecordingExtractors

  • SortingExtractors

  • Handling probe information

Recording objects

Recording objects

Sorting objects

Sorting objects

Handling probe information

Handling probe information

Waveform Extractor

Waveform Extractor

Append and/or concatenate segments

Append and/or concatenate segments

Handle time information

Handle time information

Extractors tutorials¶

The spikeinterface.extractors module is designed to load and save recorded and sorted data and to handle probe information.

  • RecordingExtractors

  • SortingExtractors

  • Handling probe information

Read various format into SpikeInterface

Read various format into SpikeInterface

Working with unscaled traces

Working with unscaled traces

Quality metrics tutorial¶

The spikeinterface.qualitymetrics module allows users to compute various quality metrics to assess the goodness of a spike sorting output.

Quality Metrics Tutorial

Quality Metrics Tutorial

Curation Tutorial

Curation Tutorial

Comparison tutorial¶

The spikeinterface.comparison module allows to compare sorter output or benchmark to ground truth.

Explore sorters weaknesses with ground-truth comparison

Explore sorters weaknesses with ground-truth comparison

Widgets tutorials¶

The widgets module contains several plotting routines (widgets) for visualizing recordings and sorting data, probe layout, and many more!

RecordingExtractor Widgets Gallery

RecordingExtractor Widgets Gallery

SortingExtractor Widgets Gallery

SortingExtractor Widgets Gallery

Waveforms Widgets Gallery

Waveforms Widgets Gallery

Peaks Widgets Gallery

Peaks Widgets Gallery

Download all examples in Python source code: modules_gallery_python.zip

Download all examples in Jupyter notebooks: modules_gallery_jupyter.zip

Gallery generated by Sphinx-Gallery

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© Copyright 2022, Alessio Paolo Buccino, Samuel Garcia, Cole Hurwitz, Jeremy Magland, Matthias Hennig. Revision ff1b8cdb.

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