spikeinterface
0.13.0

Contents:

  • Overview
  • Installation
  • Compatible Technology
  • Installing Spike Sorters
  • Getting started with SpikeInterface
  • Tutorials
    • Extractors tutorials
    • Toolkit tutorials
    • Sorters tutorials
    • Comparison tutorials
    • Widgets tutorials
      • RecordingExtractor Widgets Gallery
      • SortingExtractor Widgets Gallery
      • Recording+Sorting Widgets Gallery
        • plot_unit_waveforms()
        • plot_amplitudes_distribution()
        • plot_amplitudes_timeseres()
        • plot_pca_features()
      • Comparison Widgets Gallery
  • Spike sorting comparison methods
  • Contribute
  • API
  • Release notes
  • Contact Us
spikeinterface
  • Docs »
  • Tutorials »
  • Recording+Sorting Widgets Gallery
  • Edit on GitHub

Note

Click here to download the full example code

Recording+Sorting Widgets Gallery¶

Here is a gallery of all the available widgets using a pair of RecordingExtractor-SortingExtractor objects.

import spikeinterface.extractors as se
import spikeinterface.widgets as sw

First, let’s create a toy example with the extractors module:

recording, sorting = se.example_datasets.toy_example(duration=10, num_channels=4, seed=0)

plot_unit_waveforms()¶

w_wf = sw.plot_unit_waveforms(recording, sorting, max_spikes_per_unit=100)
Unit 1, Unit 2, Unit 3, Unit 4, Unit 5, Unit 6, Unit 7, Unit 8, Unit 9, Unit 10

plot_amplitudes_distribution()¶

w_ampd = sw.plot_amplitudes_distribution(recording, sorting, max_spikes_per_unit=300)
Unit 1, Unit 2, Unit 3, Unit 4, Unit 5, Unit 6, Unit 7, Unit 8, Unit 9, Unit 10

plot_amplitudes_timeseres()¶

w_ampt = sw.plot_amplitudes_timeseries(recording, sorting, max_spikes_per_unit=300)
Unit 1, Unit 2, Unit 3, Unit 4, Unit 5, Unit 6, Unit 7, Unit 8, Unit 9, Unit 10

plot_pca_features()¶

w_feat = sw.plot_pca_features(recording, sorting, colormap='rainbow', nproj=3, max_spikes_per_unit=100)
plot 3 recsort gallery

Total running time of the script: ( 0 minutes 2.594 seconds)

Download Python source code: plot_3_recsort_gallery.py
Download Jupyter notebook: plot_3_recsort_gallery.ipynb

Gallery generated by Sphinx-Gallery

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© Copyright 2019, Alessio Paolo Buccino, Cole Hurwitz, Jeremy Magland, Matthias Hennig, Samuel Garcia Revision d153d12c.

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