exporter module includes functions to export SI objects to other commonly used frameworks.
Exporting to Phy¶
export_to_phy() function allows you to use the Phy template GUI for
visual inspection and manual curation of spike sorting results.
The input of the
export_to_phy() is a
import spikeinterface as si from spikeinterface.exporters import export_to_phy folder = 'waveforms_mearec' we = si.extract_waveforms(recording, sorting, folder) output_folder = 'phy_folder' st.export_to_phy(we, output_folder)
Export a spike sorting report¶
The SI report provides an overview of the spike sorting output. It is designed to be a common and shareable report to assess spike sorting quality with students, collaborators, and journals.
The report includes summary figures of the spike sorting output (e.g. amplitude distributions, unit localization and depth VS amplitude) as well as unit-specific reports, that include waveforms, templates, template maps, ISI distributions, and more.
import spikeinterface as si from spikeinterface.exporters import export_report folder = 'waveforms_mearec' we = si.extract_waveforms(recording, sorting, folder) output_folder = 'report_folder' export_report(we, output_folder)